Perform ethnicity analysis with individuals genotype data from VCF file | Perform ethnicity analysis using pre-computed reference model | Perform ethnicity analysis from BAM files list | Perform ethnicity analysis using multi-step refinement | Create a reference model from multiple VCF genotype data files
Package: EthSEQ 3.0.1
EthSEQ: Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data
Reliable and rapid ethnicity annotation from whole exome and targeted sequencing data.
Authors:
EthSEQ_3.0.1.tar.gz
EthSEQ_3.0.1.zip(r-4.7-x86_64)EthSEQ_3.0.1.zip(r-4.7-arm64)EthSEQ_3.0.1.zip(r-4.6-x86_64)EthSEQ_3.0.1.zip(r-4.6-arm64)EthSEQ_3.0.1.zip(r-4.5-x86_64)
EthSEQ_3.0.1.tgz(r-4.6-x86_64)EthSEQ_3.0.1.tgz(r-4.6-arm64)EthSEQ_3.0.1.tgz(r-4.5-x86_64)EthSEQ_3.0.1.tgz(r-4.5-arm64)
EthSEQ_3.0.1.tar.gz(r-4.7-arm64)EthSEQ_3.0.1.tar.gz(r-4.7-x86_64)EthSEQ_3.0.1.tar.gz(r-4.6-arm64)EthSEQ_3.0.1.tar.gz(r-4.6-x86_64)
EthSEQ_3.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
EthSEQ/json (API)
| # Install 'EthSEQ' in R: |
| install.packages('EthSEQ', repos = c('https://cibiobcg.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cibiobcg/ethseq/issues
ethnicity-analysisexome-sequencinggenotype-datacpp
Last updated from:14e763514d. Checks:13 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | WARNING | 134 | ||
| linux-devel-x86_64 | WARNING | 122 | ||
| source / vignettes | OK | 183 | ||
| linux-release-arm64 | WARNING | 128 | ||
| linux-release-x86_64 | WARNING | 120 | ||
| macos-release-arm64 | WARNING | 114 | ||
| macos-release-x86_64 | WARNING | 336 | ||
| macos-oldrel-arm64 | WARNING | 159 | ||
| macos-oldrel-x86_64 | WARNING | 382 | ||
| windows-devel-arm64 | WARNING | 346 | ||
| windows-devel-x86_64 | WARNING | 133 | ||
| windows-release-arm64 | WARNING | 348 | ||
| windows-release-x86_64 | WARNING | 108 | ||
| windows-oldrel-x86_64 | WARNING | 134 | ||
| wasm-release | OK | 88 |
Exports:ethseq.Analysisethseq.RMgetModelsListgetSamplesInfo
Dependencies:abinddata.tablegdsfmtgeometrylinproglpSolvemagicMASSmisc3dplot3DRcppRcppProgressRhpcBLASctlSNPRelate
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Ancestry analysis from whole-exome and targeted sequencing data | ethseq.Analysis |
| Create Reference Model for Ancestry Analysis | ethseq.RM |
| List the models available | getModelsList |
| List the samples annotation | getSamplesInfo |